Users

GenomeSync was used in several studies. (Please let me know of any other project using it).

• Shinnosuke Komiya, Yoshiyuki Matsuo, So Nakagawa, Yoshiharu Morimoto, Kirill Kryukov, Hidetaka Okada, Kiichi Hirota (2022) “MinION™, a portable long-read sequencer, enables rapid vaginal microbiota analysis in a clinical setting” BMC Medical Genomics, 15, 68.
• Yoshiki Shiraishi, Kirill Kryukov, Katsuyoshi Tomomatsu, Fumio Sakamaki, Shigeaki Inoue, So Nakagawa, Tadashi Imanishi, Koichiro Asano (2021) “Diagnosis of pleural empyema/parapneumonic effusion by next-generation sequencing” Infectious Diseases, 53(6), 450-459.
• Ayumu Ohno, Kazuo Umezawa, Satomi Asai, Kirill Kryukov, So Nakagawa, Hayato Miyachi, Tadashi Imanishi (2021) “Rapid profiling of drug-resistant bacteria using DNA-binding dyes and a nanopore-based DNA sequencer” Scientific Reports, 11, 3436.
• Yoshiyuki Matsuo, Shinnosuke Komiya, Yoshiaki Yasumizu, Yuki Yasuoka, Katsura Mizushima, Tomohisa Takagi, Kirill Kryukov, Tadashi Imanishi, Aisaku Fukuda, Yoshiharu Morimoto, Yuji Naito, Hidetaka Okada, Hidemasa Bono, So Nakagawa, Kiichi Hirota (2021) “Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution” BMC Microbiology, 21, 35.
• Toru Ishihara, Nobuo Watanabe, Shigeaki Inoue, Hiromichi Aoki, Tomoatsu Tsuji, Bunsei Yamamoto, Hidetaka Yanagi, Masayuki Oki, Kirill Kryukov, So Nakagawa, Sadaki Inokuchi, Hideki Ozawa, Tadashi Imanishi (2020) “Usefulness of next-generation DNA sequencing for the diagnosis of urinary tract infection” Drug Discoveries & Therapeutics, 14(1), 42-49.
• So Nakagawa, Shigeaki Inoue, Kirill Kryukov, Junya Yamagishi, Ayumu Ohno, Kyoko Hayashida, Ruth Nakazwe, Mox Kalumbi, Darlington Mwenya, Nana Asami, Chihiro Sugimoto, Mable M. Mutengo, Tadashi Imanishi (2019) “Rapid sequencing-based diagnosis of infectious bacterial species from meningitis patients in Zambia” Clinical & Translational Immunology, 8(11), e01087.
• Hiromasa Tanaka, Yoshiyuki Matsuo, So Nakagawa, Kenichiro Nishi, Akihisa Okamoto, Shinichi Kai, Teppei Iwai, Yoshiteru Tabata, Takeshi Tajima, Yuji Komatsu, Motohiko Satoh, Kirill Kryukov, Tadashi Imanishi, Kiichi Hirota (2019) “Application of the MinION™ portable DNA sequencer in clinical microbiology evaluation: a case report” JA Clinical Reports, 5, 24.
• Shinichi Kai, Yoshiyuki Matsuo, So Nakagawa, Kirill Kryukov, Shino Matsukawa, Hiromasa Tanaka, Teppei Iwai, Tadashi Imanishi, Kiichi Hirota (2019) “Rapid bacterial identification by direct PCR amplification of 16S rRNA genes using the MinION™ nanopore sequencer” FEBS Open Bio, 9(3), 548-557.
• Kirill Kryukov, Mahoko Takahashi Ueda, Tadashi Imanishi, So Nakagawa (2019) “Systematic survey of non-retroviral virus-like elements in eukaryotic genomes” Virus Research, 262, 30-36.
• Nobuo Watanabe, Kirill Kryukov, So Nakagawa, Junko S. Takeuchi, Meiko Takeshita, Yukiko Kirimura, Satomi Mitsuhashi, Toru Ishihara, Hiromichi Aoki, Sadaki Inokuchi, Tadashi Imanishi, Shigeaki Inoue (2018) “Detection of pathogenic bacteria in the blood from sepsis patients using 16S rRNA gene amplicon sequencing analysis” PLoS One, 13(8), e0202049.
• Satomi Mitsuhashi, Kirill Kryukov, So Nakagawa, Junko S. Takeuchi, Yoshiki Shiraishi, Koichiro Asano, Tadashi Imanishi (2017) “A portable system for rapid bacterial composition analysis using a nanopore-based sequencer and laptop computer” Scientific Reports, 7(1), 5657.
• Yukihiro Horio, Yoshiki Shiraishi, Nobuo Watanabe, Shigeaki Inoue, Tadashi Imanishi, Koichiro Asano (2017) “Empyema associated with Campylobacter curvus infection” Respirology Case Reports, 5(4), e00234.
• Kirill Kryukov, Tadashi Imanishi (2016) “Human Contamination in Public Genome Assemblies” PLoS One, 11(9), e0162424.